SPM deformation field

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Inheritance graph

Defined in file : brainvisa/toolboxes/spm/types/MRI_spm.py

Used in the following processes

CAT12 - Segment
SPM12 - Normalise: Write only - generic
spm12 - Segment
spm8 - New Segment
spm8 - VBM Segmentation

Associated formats

BrainVISA volume formats
gz compressed NIFTI-1 image
MINC image
NIFTI-1 image
SPM image

Associated ontology rules

  • brainvisa-3.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
  • brainvisa-3.1.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
  • brainvisa-3.2.0 :
    • {center}/{subject}/longitudinal_preprocessings/spm12Serial/avg_{acquisition_sequence}/{analysis}/iy_<subject>_{acquisition}_to_avg_<acquisition_sequence>_inverse_deformation_field
    {center}/{subject}/longitudinal_preprocessings/spm12Serial/avg_{acquisition_sequence}/{analysis}/y_<subject>_{acquisition}_to_avg_<acquisition_sequence>
    {center}/{subject}/longitudinal_preprocessings/spm12Pairwise/avg_{acquisition_sequence}/{analysis}/iy_<subject>_{acquisition}_to_avg_<acquisition_sequence>_inverse_deformation_field
    {center}/{subject}/longitudinal_preprocessings/spm12Pairwise/avg_{acquisition_sequence}/{analysis}/y_<subject>_{acquisition}_to_avg_<acquisition_sequence>
    {center}/{subject}/spm/cat12Segment/{acquisition}/{analysis}/mri/y_<subject>
    {center}/{subject}/spm/cat12Segment/{acquisition}/{analysis}/mri/iy_<subject>
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm12Shoot/{acquisition}/{analysis}_using_{template}/y_{prefix}<subject>_Template

    Key attributes

  • brainvisa-3.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  direction ,  warping_method
  • brainvisa-3.1.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  direction ,  warping_method
  • brainvisa-3.2.0 :
    • center ,  subject ,  acquisition_sequence ,  analysis ,  acquisition ,  direction ,  processing ,  template ,  warping_method ,  prefix